Fractional coverings, greedy coverings, and rectifier networks

A rectifier network is a directed acyclic graph with distinguished sources and sinks; it is said to compute a Boolean matrix M that has a 1 in the entry (i,j) iff there is a path from the j-th source to the i-th sink. The smallest number of edges in a rectifier network that computes M is a classic complexity measure on matrices, which has been studied for more than half a century. We explore two techniques that have hitherto found little to no applications in this theory. They build upon a basic fact that depth-2 rectifier networks are essentially weighted coverings of Boolean matrices with rectangles. Using fractional and greedy coverings (defined in the standard way), we obtain new results in this area. First, we show that all fractional coverings of the so-called full triangular matrix have cost at least n log n. This provides (a fortiori) a new proof of the tight lower bound on its depth-2 complexity (the exact value has been known since 1965, but previous proofs are based on different arguments). Second, we show that the greedy heuristic is instrumental in tightening the upper bound on the depth-2 complexity of the Kneser-Sierpinski (disjointness) matrix. The previous upper bound is O(n^{1.28}), and we improve it to O(n^{1.17}), while the best known lower bound is Omega(n^{1.16}). Third, using fractional coverings, we obtain a form of direct product theorem that gives a lower bound on unbounded-depth complexity of Kronecker (tensor) products of matrices. In this case, the greedy heuristic shows (by an argument due to Lovász) that our result is only a logarithmic factor away from the "full" direct product theorem. Our second and third results constitute progress on open problem 7.3 and resolve, up to a logarithmic factor, open problem 7.5 from a recent book by Jukna and Sergeev (in Foundations and Trends in Theoretical Computer Science (2013)

Locked and Unlocked Polygonal Chains in 3D

In this paper, we study movements of simple polygonal chains in 3D. We say that an open, simple polygonal chain can be straightened if it can be continuously reconfigured to a straight sequence of segments in such a manner that both the length of each link and the simplicity of the chain are maintained throughout the movement. The analogous concept for closed chains is convexification: reconfiguration to a planar convex polygon. Chains that cannot be straightened or convexified are called locked. While there are open chains in 3D that are locked, we show that if an open chain has a simple orthogonal projection onto some plane, it can be straightened. For closed chains, we show that there are unknotted but locked closed chains, and we provide an algorithm for convexifying a planar simple polygon in 3D with a polynomial number of moves.Comment: To appear in Proc. 10th ACM-SIAM Sympos. Discrete Algorithms, Jan. 199

On The Complexity and Completeness of Static Constraints for Breaking Row and Column Symmetry

We consider a common type of symmetry where we have a matrix of decision variables with interchangeable rows and columns. A simple and efficient method to deal with such row and column symmetry is to post symmetry breaking constraints like DOUBLELEX and SNAKELEX. We provide a number of positive and negative results on posting such symmetry breaking constraints. On the positive side, we prove that we can compute in polynomial time a unique representative of an equivalence class in a matrix model with row and column symmetry if the number of rows (or of columns) is bounded and in a number of other special cases. On the negative side, we show that whilst DOUBLELEX and SNAKELEX are often effective in practice, they can leave a large number of symmetric solutions in the worst case. In addition, we prove that propagating DOUBLELEX completely is NP-hard. Finally we consider how to break row, column and value symmetry, correcting a result in the literature about the safeness of combining different symmetry breaking constraints. We end with the first experimental study on how much symmetry is left by DOUBLELEX and SNAKELEX on some benchmark problems.Comment: To appear in the Proceedings of the 16th International Conference on Principles and Practice of Constraint Programming (CP 2010

The floodlight problem

Given three angles summing to 2, given n points in the plane and a tripartition k1 + k2 + k3 = n, we can tripartition the plane into three wedges of the given angles so that the i-th wedge contains ki of the points. This new result on dissecting point sets is used to prove that lights of specied angles not exceeding can be placed at n xed points in the plane to illuminate the entire plane if and only if the angles sum to at least 2. We give O(n log n) algorithms for both these problems

Recognizing hyperelliptic graphs in polynomial time

Recently, a new set of multigraph parameters was defined, called "gonalities". Gonality bears some similarity to treewidth, and is a relevant graph parameter for problems in number theory and multigraph algorithms. Multigraphs of gonality 1 are trees. We consider so-called "hyperelliptic graphs" (multigraphs of gonality 2) and provide a safe and complete sets of reduction rules for such multigraphs, showing that for three of the flavors of gonality, we can recognize hyperelliptic graphs in O(n log n+m) time, where n is the number of vertices and m the number of edges of the multigraph.Comment: 33 pages, 8 figure

Locked and Unlocked Polygonal Chains in Three Dimensions

This paper studies movements of polygonal chains in three dimensions whose links are not allowed to cross or change length. Our main result is an algorithmic proof that any simple closed chain that initially takes the form of a planar polygon can be made convex in three dimensions. Other results include an algorithm for straightening open chains having a simple orthogonal projection onto some plane, and an algorithm for making convex any open chain initially configured on the surface of a polytope. All our algorithms require only O (n) basic moves.

On the Area Requirements of Planar Greedy Drawings of Triconnected Planar Graphs

In this paper we study the area requirements of planar greedy drawings of triconnected planar graphs. Cao, Strelzoff, and Sun exhibited a family $\cal H$ of subdivisions of triconnected plane graphs and claimed that every planar greedy drawing of the graphs in $\mathcal H$ respecting the prescribed plane embedding requires exponential area. However, we show that every $n$-vertex graph in $\cal H$ actually has a planar greedy drawing respecting the prescribed plane embedding on an $O(n)\times O(n)$ grid. This reopens the question whether triconnected planar graphs admit planar greedy drawings on a polynomial-size grid. Further, we provide evidence for a positive answer to the above question by proving that every $n$-vertex Halin graph admits a planar greedy drawing on an $O(n)\times O(n)$ grid. Both such results are obtained by actually constructing drawings that are convex and angle-monotone. Finally, we consider $\alpha$-Schnyder drawings, which are angle-monotone and hence greedy if $\alpha\leq 30^\circ$, and show that there exist planar triangulations for which every $\alpha$-Schnyder drawing with a fixed $\alpha<60^\circ$ requires exponential area for any resolution rule

The Index-Based Subgraph Matching Algorithm with General Symmetries (ISMAGS):Exploiting Symmetry for Faster Subgraph Enumeration

Subgraph matching algorithms are used to find and enumerate specific interconnection structures in networks. By enumerating these specific structures/subgraphs, the fundamental properties of the network can be derived. More specifically in biological networks, subgraph matching algorithms are used to discover network motifs, specific patterns occurring more often than expected by chance. Finding these network motifs yields information on the underlying biological relations modelled by the network. In this work, we present the Index-based Subgraph Matching Algorithm with General Symmetries (ISMAGS), an improved version of the Index-based Subgraph Matching Algorithm (ISMA). ISMA quickly finds all instances of a predefined motif in a network by intelligently exploring the search space and taking into account easily identifiable symmetric structures. However, more complex symmetries (possibly involving switching multiple nodes) are not taken into account, resulting in superfluous output. ISMAGS overcomes this problem by using a customised symmetry analysis phase to detect all symmetric structures in the network motif subgraphs. These structures are then converted to symmetry-breaking constraints used to prune the search space and speed up calculations. The performance of the algorithm was tested on several types of networks (biological, social and computer networks) for various subgraphs with a varying degree of symmetry. For subgraphs with complex (multi-node) symmetric structures, high speed-up factors are obtained as the search space is pruned by the symmetry-breaking constraints. For subgraphs with no or simple symmetric structures, ISMAGS still reduces computation times by optimising set operations. Moreover, the calculated list of subgraph instances is minimal as it contains no instances that differ by only a subgraph symmetry. An implementation of the algorithm is freely available at https://github.com/mhoubraken/ISMAGS